Ashbya Genome Database .


Database Description

The Ensembl Compara multi-species database stores the results of genome-wide species comparisons calculated for each data release. The database includes:

  • Comparative genomics:

    • Whole genome alignments

    • Synteny regions

  • Comparative proteomics:

    • Orthologue predictions

    • Paralogue predictions

    • Protein family clusters

Database Schema

The table layout of the database is explained in the following document:

Perl API

A comprehensive Perl Application Programme Interface (API) provides efficient access to the Ensembl Compara database.

Java API

The Ensembl Java API (Ensj) is slightly less complete than the Perl APIs but implements access to Ensembl Core, Compara and Variation databases simultaneously.

Ensembl Software Support

Ensembl is an open project and we would like to encourage correspondence and discussions on any subject on any aspect of Ensembl. Please see the Ensembl Contacts page for suitable options getting in touch with us.


© 2024 University of Basel. This product includes software developed by Ensembl.

AGD version 3 based on Ensembl release 40 - Aug 2006