Ashbya Genome Database .

 

These pages provide step-by-step instructions for installing your own version of the Ensembl web site. They are intended to be complete; that is, if you install the site simply by following these instructions, it should work.

This document is updated with each new release. If you find any omissions, errors, or just confusing bits in the instructions, please send an email to ensembl-webteam@sanger.ac.uk, and we'll try to fix things.

Summary of Instructions

There are four main sections to these instructions:

Site Structure
Describes the directory structure of the site, and what the various sections do.
Build/Install
How to install all the components that make up the site.
Configuration
Instructions for configuring the site for your local set-up.
Running the site
How to start up, shut down, and generally maintain the site.

Before you start

Running the Ensembl web site can be rather taxing on hardware. At a minimum you will need:

  • A UNIX-like OS (e.g. Tru64, Solaris, Linux, OS X, etc.)
  • Just over 200 Gigabytes of free hard-disk to hold a complete set of MySQL databases, and about the same again for downloading and unpacking the data. Depending on your requirements, you may wish to only install data for one or more species. The size requirements are roughly:
Species Data size (Gb)
Aedes_aegypti4.9
Anopheles_gambiae2.8
Bos_taurus5.6
Caenorhabditis_elegans2.8
Canis_familiaris8.0
Ciona_intestinalis2.2
Ciona_savignyi2.6
Danio_rerio7.6
Dasypus_novemcinctus5.2
Drosophila_melanogaster1.0
Echinops_telfairi5.8
Gallus_gallus5.3
Gasterosteus_aculeatus4.6
Homo_sapiens22.3
Loxodonta_africana5.9
Macaca_mulatta6.3
Monodelphis_domestica9.0
Mus_musculus24.6
Oryctolagus_cuniculus6.0
Pan_troglodytes5.2
Rattus_norvegicus7.2
Saccharomyces_cerevisiae0.1
Takifugu_rubripes5.9
Tetraodon_nigroviridis3.4
Xenopus_tropicalis6.0
Multi-species  
Compara40.4
Go4.6
Mart84.6
Total 289.7

 

© 2024 University of Basel. This product includes software developed by Ensembl.

                
AGD version 3 based on Ensembl release 40 - Aug 2006
Help